species:   Scscl
pid:       PID1640
parent:    Ssc-milR-116
paralog:   
locus:     NW_001820824.1:808840-808927
matures:   ['UGUUAGUGUUAAGGAUGGCUA', 'GUUUCUUGAAUAUGUUGACGAU']
srr:       SRR12527898
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527898.cram NW_001820824.1:808840-808927

16 out of bounds
10 alignments
10 proper strand
9 stranded perfect matches

 ********************************                               *********************** 
UUGAGCUGAUCUUCCAGGGGUAGUUUCUUGAAUAUGUUGACGAUGGUUGAUGAAAGUUGUUAGUGUUAAGGAUGGCUAUCCAGUUCUC
..(((((..........((((((((((((.(((((..(((((((..((...))..)))))))))))).)))).)))))))))))))..
---------------------------------------------------------UGUUAGUGUUAAGGAUGGCUA---------- l=21 a=0 c
----------------------GUUUCUUGAAUAUGUUGACGAU-------------------------------------------- l=22 a=0 c*
------------------------------------------------------------------UAAGGAUGGCUAUCCAGUUCU- l=21 a=2 ma
---AGCUGAUCUUCCAGGGGUAGUUUCUUGAAU------------------------------------------------------- l=30 a=0 ma*

------------------------------------------------------------------UAAGGAUGGCUAUCCAGUUCU- l=21 a=2 (ma)
-----------------------------------------------------------------UUAAGGAUGGCUAUCCAGUUCU- l=22 a=2 
---------------------------------------------------------------UGUUAAGGAUGGCUAUCCAGU---- l=21 a=1 
---------------------------------------------------------------UGUUAAGGAUGGCUAUCCAGUa--- l=22 a=1 
------------------------------------------------------------UAGUGUUAAGGAUGGCUAUCCA------ l=22 a=1 
---------------------------------------------------------UGUUAGUGUUAAGGAUGGCUAU--------- l=22 a=2 
---------------------------------------------------------UGUUAGUGUUAAGGAUGGCUAUC-------- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-111111101000
fn-111
